Package: leidenbase 0.1.30

Brent Ewing

leidenbase: R and C/C++ Wrappers to Run the Leiden find_partition() Function

An R to C/C++ interface that runs the Leiden community detection algorithm to find a basic partition (). It runs the equivalent of the 'leidenalg' find_partition() function, which is given in the 'leidenalg' distribution file 'leiden/src/functions.py'. This package includes the required source code files from the official 'leidenalg' distribution and functions from the R 'igraph' package. The 'leidenalg' distribution is available from <https://github.com/vtraag/leidenalg/> and the R 'igraph' package is available from <https://igraph.org/r/>. The Leiden algorithm is described in the article by Traag et al. (2019) <doi:10.1038/s41598-019-41695-z>. Leidenbase includes code from the packages: igraph version 0.9.8 with license GPL (>= 2), leidenalg version 0.8.10 with license GPL 3.

Authors:Brent Ewing [aut, cre], Vincent Traag [ctb], Gábor Csárdi [ctb], Tamás Nepusz [ctb], Szabolcs Horvat [ctb], Fabio Zanini [ctb]

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leidenbase.pdf |leidenbase.html
leidenbase/json (API)
NEWS

# Install 'leidenbase' in R:
install.packages('leidenbase', repos = c('https://cole-trapnell-lab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/cole-trapnell-lab/leidenbase/issues

Uses libs:
  • libxml2– GNOME XML library
  • glpk– Linear programming kit with integer (MIP) support
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3

On CRAN:

6.71 score 13 stars 4 packages 44 scripts 7.4k downloads 1 exports 11 dependencies

Last updated 4 months agofrom:1f9081aeb3. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 12 2024
R-4.5-win-x86_64NOTENov 12 2024
R-4.5-linux-x86_64NOTENov 12 2024
R-4.4-win-x86_64NOTENov 12 2024
R-4.4-mac-x86_64NOTENov 12 2024
R-4.4-mac-aarch64NOTENov 12 2024
R-4.3-win-x86_64NOTENov 12 2024
R-4.3-mac-x86_64NOTENov 12 2024
R-4.3-mac-aarch64NOTENov 12 2024

Exports:leiden_find_partition

Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs

leidenbase.Rmd

Rendered fromleidenbase.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2023-07-19
Started: 2022-01-24